ballgown
Flexible, isoform-level differential expression analysis
Bioconductor version: 3.23 · Package version: 2.44.0
Tools for statistical analysis of assembled transcriptomes, including flexible differential expression analysis, visualization of transcript structures, and matching of assembled transcripts to annotation.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ballgown")Details
| Maintainer | Jack Fu <jmfu@jhsph.edu> |
| Author | Jack Fu [aut], Alyssa C. Frazee [aut, cre], Leonardo Collado-Torres [aut], Andrew E. Jaffe [aut], Jeffrey T. Leek [aut, ths] |
| License | Artistic-2.0 |
| Bug Reports | https://github.com/alyssafrazee/ballgown/issues |
| Status | Deprecated |
| Downloads rank | 1920 |
| Source branch | RELEASE_3_23 |
| biocViews | DifferentialExpression, ImmunoOncology, Preprocessing, RNASeq, Software, StatisticalMethod |
Documentation
Download
Dependencies
Depends: R (>= 3.5.0), methods
Imports: GenomicRanges (>= 1.17.25), IRanges (>= 1.99.22), S4Vectors (>= 0.9.39), RColorBrewer, splines, sva, limma, rtracklayer (>= 1.29.25), Biobase (>= 2.25.0), Seqinfo