atena

Analysis of Transposable Elements

Bioconductor version: 3.23 · Package version: 1.18.0

Quantify expression of transposable elements (TEs) from RNA-seq data through different methods, including ERVmap, TEtranscripts and Telescope. A common interface is provided to use each of these methods, which consists of building a parameter object, calling the quantification function with this object and getting a SummarizedExperiment object as output container of the quantified expression profiles. The implementation allows one to quantify TEs and gene transcripts in an integrated manner.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("atena")