artMS

Analytical R tools for Mass Spectrometry

Bioconductor version: 3.23 · Package version: 1.30.0

artMS provides a set of tools for the analysis of proteomics label-free datasets. It takes as input the MaxQuant search result output (evidence.txt file) and performs quality control, relative quantification using MSstats, downstream analysis and integration. artMS also provides a set of functions to re-format and make it compatible with other analytical tools, including, SAINTq, SAINTexpress, Phosfate, and PHOTON. Check [http://artms.org](http://artms.org) for details.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("artMS")