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aroma.light

Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data Types

Bioconductor version: 3.23 · Package version: 3.42.0

Methods for microarray analysis that take basic data types such as matrices and lists of vectors. These methods can be used standalone, be utilized in other packages, or be wrapped up in higher-level classes.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("aroma.light")

Details

MaintainerHenrik Bengtsson <henrikb@braju.com>
AuthorHenrik Bengtsson [aut, cre, cph], Pierre Neuvial [ctb], Aaron Lun [ctb]
LicenseGPL (>= 2)
URLhttps://github.com/HenrikBengtsson/aroma.light, https://www.aroma-project.org
Bug Reportshttps://github.com/HenrikBengtsson/aroma.light/issues
Downloads rank2036
Source branchRELEASE_3_23
biocViewsInfrastructure, Microarray, MultiChannel, OneChannel, Preprocessing, Software, TwoChannel, Visualization

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Dependencies

Depends: R (>= 2.15.2)

Imports: stats, R.methodsS3 (>= 1.7.1), R.oo (>= 1.23.0), R.utils (>= 2.9.0), matrixStats (>= 0.55.0)

Suggests: princurve (>= 2.1.4)

Reverse dependencies

Imports Me (4): EDASeq, EventPointer, PSCBS, scone

Suggests Me (4): aroma.affymetrix, aroma.cn, aroma.core, TIN