apeglm

Approximate posterior estimation for GLM coefficients

Bioconductor version: 3.23 · Package version: 1.34.0

apeglm provides Bayesian shrinkage estimators for effect sizes for a variety of GLM models, using approximation of the posterior for individual coefficients.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("apeglm")

Details

Maintainer	Anqi Zhu <anqizhu@live.unc.edu>
Author	Anqi Zhu [aut, cre], Joshua Zitovsky [ctb], Joseph Ibrahim [aut], Michael Love [aut]
License	GPL-2
Downloads rank	6344
Source branch	RELEASE_3_23
biocViews	Bayesian, DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software

Documentation

Effect size estimation with apeglm

Download

Source package

Dependencies

Imports: emdbook, SummarizedExperiment, GenomicRanges, methods, stats, utils, Rcpp

LinkingTo: Rcpp, RcppEigen, RcppNumerical

Suggests: DESeq2, airway, knitr, rmarkdown, testthat

Reverse dependencies

Depends On Me (1): rnaseqGene

Imports Me (7): airpart, debrowser, DiffBind, ERSSA, phantasus, Rmmquant, TEKRABber

Suggests Me (9): bambu, dar, DeeDeeExperiment, DESeq2, extraChIPs, fishpond, NanoporeRNASeq, RNAseqQC, terapadog