annoLinker

Annotating genomic regions through chromatin interaction links

Bioconductor version: 3.23 · Package version: 1.0.0

Fast annotation of genomic peaks using DNA interaction data by constructing interaction networks with igraph, where peaks overlapping any node in a connected subgraph are annotated with all genes in that subgraph. The annotation evidence could be visualized as either a network graph or a genomic track integrated with gene annotation information.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("annoLinker")