alevinQC

Generate QC Reports For Alevin Output

Bioconductor version: 3.23 · Package version: 1.28.0

Generate QC reports summarizing the output from an alevin, alevin-fry, or simpleaf run. Reports can be generated as html or pdf files, or as shiny applications.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("alevinQC")

Details

Maintainer	Charlotte Soneson <charlottesoneson@gmail.com>
Author	Charlotte Soneson [aut, cre] (ORCID: <https://orcid.org/0000-0003-3833-2169>), Avi Srivastava [aut], Rob Patro [aut], Dongze He [aut]
License	MIT + file LICENSE
URL	https://github.com/csoneson/alevinQC
Bug Reports	https://github.com/csoneson/alevinQC/issues
Downloads rank	303
Source branch	RELEASE_3_23
biocViews	QualityControl, SingleCell, Software

Documentation

alevinQC

Download

Source package

Dependencies

Depends: R (>= 4.0)

Imports: rmarkdown (>= 2.5), tools, methods, ggplot2 (>= 3.4.0), GGally, dplyr, rjson, shiny, shinydashboard, DT, stats, utils, tximport (>= 1.17.4), cowplot, rlang, Rcpp

LinkingTo: Rcpp

Suggests: knitr, BiocStyle, testthat (>= 3.0.0), BiocManager