alabaster.vcf
Save and Load Variant Data to/from File
Bioconductor version: 3.23 · Package version: 1.12.0
Save variant calling SummarizedExperiment to file and load them back as VCF objects. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("alabaster.vcf") Details
| Maintainer | Aaron Lun <infinite.monkeys.with.keyboards@gmail.com> |
| Author | Aaron Lun [aut, cre] |
| License | MIT + file LICENSE |
| Downloads rank | 202 |
| Source branch | RELEASE_3_23 |
| biocViews | DataImport, DataRepresentation, Software |
Documentation
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Dependencies
Depends: alabaster.base, VariantAnnotation
Imports: methods, S4Vectors, alabaster.se, alabaster.string, Rsamtools
Reverse dependencies
Imports Me (1): alabaster