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alabaster.se

Load and Save SummarizedExperiments from File

Bioconductor version: 3.23 · Package version: 1.12.0

Save SummarizedExperiments into file artifacts, and load them back into memory. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("alabaster.se")

Details

MaintainerAaron Lun <infinite.monkeys.with.keyboards@gmail.com>
AuthorAaron Lun [aut, cre]
LicenseMIT + file LICENSE
Downloads rank4871
Source branchRELEASE_3_23
biocViewsDataImport, DataRepresentation, Software

Documentation

Download

Dependencies

Depends: SummarizedExperiment, alabaster.base

Imports: methods, alabaster.ranges, alabaster.matrix, BiocGenerics, S4Vectors, IRanges, GenomicRanges, jsonlite

Suggests: rmarkdown, knitr, testthat, BiocStyle

Reverse dependencies

Imports Me (5): alabaster, alabaster.mae, alabaster.sce, alabaster.vcf, celldex