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adverSCarial

adverSCarial, generate and analyze the vulnerability of scRNA-seq classifier to adversarial attacks

Bioconductor version: 3.23 · Package version: 1.10.0

adverSCarial is an R Package designed for generating and analyzing the vulnerability of scRNA-seq classifiers to adversarial attacks. The package is versatile and provides a format for integrating any type of classifier. It offers functions for studying and generating two types of attacks, single gene attack and max change attack. The single-gene attack involves making a small modification to the input to alter the classification. The max-change attack involves making a large modification to the input without changing its classification. The CGD attack is based on an estimated gradient descent. against adversarial attacks. The package provides a comprehensive solution for evaluating the robustness of scRNA-seq classifiers against adversarial attacks.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("adverSCarial")

Details

MaintainerGhislain FIEVET <ghislain.fievet@gmail.com>
AuthorGhislain FIEVET [aut, cre] (ORCID: <https://orcid.org/0000-0002-0337-7327>), Sébastien HERGALANT [aut] (ORCID: <https://orcid.org/0000-0001-8456-7992>)
LicenseMIT + file LICENSE
Downloads rank185
Source branchRELEASE_3_23
biocViewsClassification, SingleCell, Software, Transcriptomics

Documentation

Download

Dependencies

Depends: R (>= 3.5.0)

Imports: gtools, S4Vectors, methods, DelayedArray

Suggests: knitr, RUnit, BiocGenerics, TENxPBMCData, CHETAH, stringr, LoomExperiment