VaSP
Quantification and Visualization of Variations of Splicing in Population
Bioconductor version: 3.23 · Package version: 1.24.0
Discovery of genome-wide variable alternative splicing events from short-read RNA-seq data and visualizations of gene splicing information for publication-quality multi-panel figures in a population. (Warning: The visualizing function is removed due to the dependent package Sushi deprecated. If you want to use it, please change back to an older version.)
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("VaSP") Details
| Maintainer | Huihui Yu <yuhuihui2011@foxmail.com> |
| Author | Huihui Yu [aut, cre] (ORCID: <https://orcid.org/0000-0003-2725-1937>), Qian Du [aut] (ORCID: <https://orcid.org/0000-0003-3864-8745>), Chi Zhang [aut] (ORCID: <https://orcid.org/0000-0002-1827-8137>) |
| License | GPL (>= 2.0) |
| URL | https://github.com/yuhuihui2011/VaSP |
| Bug Reports | https://github.com/yuhuihui2011/VaSP/issues |
| Downloads rank | 308 |
| Source branch | RELEASE_3_23 |
| biocViews | AlternativeSplicing, Clustering, DifferentialExpression, DifferentialSplicing, ImmunoOncology, KEGG, Preprocessing, RNASeq, Software, StatisticalMethod, Visualization |
Documentation
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Dependencies
Depends: R (>= 4.0), ballgown
Imports: IRanges, GenomicRanges, S4Vectors, parallel, matrixStats, GenomicAlignments, GenomeInfoDb, Rsamtools, cluster, stats, graphics, methods