VISTA

Visualization and Integrated System for Transcriptomic Analysis

Bioconductor version: 3.23 · Package version: 1.0.0

The VISTA (Visualization and Integrated System for Transcriptomic Analysis) platform streamlines differential expression workflows by wrapping DESeq2 and edgeR into a SummarizedExperiment-based container with consistent metadata. The package includes visualization utilities, MSigDB enrichment helpers, and optional deconvolution support to simplify interactive exploration of RNA-seq experiments.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("VISTA")

Details

Maintainer	Chirag Parsania <chirag.parsania@gmail.com>
Author	Chirag Parsania [aut, cre]
License	GPL-3
URL	https://github.com/cparsania/VISTA, https://cparsania.github.io/VISTA/
Bug Reports	https://github.com/cparsania/VISTA/issues
Downloads rank	49
Source branch	RELEASE_3_23
biocViews	DifferentialExpression, GeneExpression, RNASeq, Software, Transcriptomics, Visualization

Documentation

Complete RNA-seq Analysis Workflow with VISTA

Download

Source package

Dependencies

Depends: R (>= 4.3)

Imports: AnnotationDbi, cli, clusterProfiler, colorspace, DESeq2, dplyr, edgeR, forcats, ggplot2, ggrepel, GGally, ggpubr, grid, matrixStats, methods, msigdbr, limma, purrr, rlang, S4Vectors, scales, stringr, SummarizedExperiment, tibble, tidyr, tidyselect, viridis

Suggests: airway, BiocStyle, circlize, ComplexHeatmap, DT, EnhancedVolcano, ggpointdensity, ggridges, ggalluvial, ggcorrplot, ggrain, ggvenn, enrichplot, knitr, magrittr, patchwork, org.Hs.eg.db, org.Mm.eg.db, quarto, rmarkdown, yaml, writexl, testthat (>= 3.0.0), uwot, xCell2