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TumourMethData

A Collection of DNA Methylation Datasets for Human Tumour Samples and Matching Normal Samples

Bioconductor version: 3.23 · Package version: 1.9.0

TumourMethData collects tumour methylation data from a variety of different tumour types (and also matching normal samples where available) and produced with different technologies (e.g. WGBS, RRBS and methylation arrays) and provides them as RangedSummarizedExperiments. This facilitates easy extraction of methylation data for regions of interest across different tumour types and studies.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TumourMethData")

Details

MaintainerRichard Heery <richardheery@gmail.com>
AuthorRichard Heery [aut, cre] (ORCID: <https://orcid.org/0000-0001-8067-3114>)
LicenseArtistic-2.0
URLhttps://github.com/richardheery/TumourMethData
Bug Reportshttps://support.bioconductor.org/tag/TumourMethData
Downloads rank84
Source branchRELEASE_3_23
biocViewsCancerData, ExperimentData, ExperimentHub, Homo_sapiens_Data, MethylSeqData

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Dependencies

Depends: R (>= 4.2), SummarizedExperiment

Imports: ExperimentHub, GenomicRanges, HDF5Array, R.utils, rhdf5

Suggests: ggplot2, knitr, rmarkdown

Reverse dependencies

Imports Me (1): methodical