TumourMethData
A Collection of DNA Methylation Datasets for Human Tumour Samples and Matching Normal Samples
Bioconductor version: 3.23 · Package version: 1.9.0
TumourMethData collects tumour methylation data from a variety of different tumour types (and also matching normal samples where available) and produced with different technologies (e.g. WGBS, RRBS and methylation arrays) and provides them as RangedSummarizedExperiments. This facilitates easy extraction of methylation data for regions of interest across different tumour types and studies.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TumourMethData") Details
| Maintainer | Richard Heery <richardheery@gmail.com> |
| Author | Richard Heery [aut, cre] (ORCID: <https://orcid.org/0000-0001-8067-3114>) |
| License | Artistic-2.0 |
| URL | https://github.com/richardheery/TumourMethData |
| Bug Reports | https://support.bioconductor.org/tag/TumourMethData |
| Downloads rank | 84 |
| Source branch | RELEASE_3_23 |
| biocViews | CancerData, ExperimentData, ExperimentHub, Homo_sapiens_Data, MethylSeqData |
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Dependencies
Depends: R (>= 4.2), SummarizedExperiment
Imports: ExperimentHub, GenomicRanges, HDF5Array, R.utils, rhdf5
Reverse dependencies
Imports Me (1): methodical