TreeAndLeaf

Displaying binary trees with focus on dendrogram leaves

Bioconductor version: 3.23 · Package version: 1.24.0

TreeAndLeaf implements a hybrid layout strategy that enhances leaf-level visualization in dendrograms. By integrating force-directed graph and tree layout algorithms, it enables projection of multiple layers of information onto graph–tree diagrams.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TreeAndLeaf")

Details

Maintainer	Mauro Castro <mauro.a.castro@gmail.com>
Author	Milena Cardoso [aut], Luis Rizzardi [aut], Leonardo Kume [aut], Sheyla Trefflich [ctb], Clarice Groeneveld [ctb], Mauro Castro [aut, cre] (ORCID: <https://orcid.org/0000-0003-4942-8131>)
License	Artistic-2.0
URL	https://doi.org/10.1093/bioinformatics/btab819
Bug Reports	https://github.com/sysbiolab/TreeAndLeaf/issues
Downloads rank	298
Source branch	RELEASE_3_23
biocViews	DataRepresentation, GraphAndNetwork, Network, Software, SystemsBiology, Visualization

Documentation

TreeAndLeaf: A graph layout strategy for binary trees with focus on the leaves

Download

Source package

Dependencies

Depends: R (>= 4.4)

Imports: RedeR (>= 3.6.1), igraph, ape

Suggests: knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics, stringr, ggtree, ggplot2, dplyr, dendextend, RColorBrewer

Reverse dependencies

Suggests Me (1): RedeR