ToxicoGx

Analysis of Large-Scale Toxico-Genomic Data

Bioconductor version: 3.23 · Package version: 2.16.0

Contains a set of functions to perform large-scale analysis of toxicogenomic data, providing a standardized data structure to hold information relevant to annotation, visualization and statistical analysis of toxicogenomic data.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ToxicoGx")

Details

Maintainer	Benjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>
Author	Sisira Nair [aut], Esther Yoo [aut], Christopher Eeles [aut], Amy Tang [aut], Nehme El-Hachem [aut], Petr Smirnov [aut], Jermiah Joseph [aut], Benjamin Haibe-Kains [aut, cre]
License	MIT + file LICENSE
Downloads rank	331
Source branch	RELEASE_3_23
biocViews	GeneExpression, Pharmacogenetics, Pharmacogenomics, Software

Documentation

ToxicoGx: An R Platform for Integrated Toxicogenomics Data Analysis

Download

Source package

Dependencies

Depends: R (>= 4.1), CoreGx

Imports: SummarizedExperiment, BiocGenerics, S4Vectors, Biobase, BiocParallel, ggplot2, tibble, dplyr, caTools, downloader, magrittr, methods, reshape2, tidyr, data.table, assertthat, scales, graphics, grDevices, parallel, stats, utils, limma, jsonlite

Suggests: rmarkdown, testthat, BiocStyle, knitr, tinytex, devtools, PharmacoGx, xtable, markdown