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TargetSearch

A package for the analysis of GC-MS metabolite profiling data

Bioconductor version: 3.23 · Package version: 2.14.0

This packages provides a flexible, fast and accurate method for targeted pre-processing of GC-MS data. The user provides a (often very large) set of GC chromatograms and a metabolite library of targets. The package will automatically search those targets in the chromatograms resulting in a data matrix that can be used for further data analysis.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TargetSearch")

Details

MaintainerAlvaro Cuadros-Inostroza <acuadros+bioc@gmail.com>
AuthorAlvaro Cuadros-Inostroza [aut, cre], Jan Lisec [aut], Henning Redestig [aut], Matt Hannah [aut]
LicenseGPL (>= 2)
URLhttps://github.com/acinostroza/TargetSearch
Bug Reportshttps://github.com/acinostroza/TargetSearch/issues
Downloads rank322
Source branchRELEASE_3_23
biocViewsDecisionTree, ImmunoOncology, MassSpectrometry, Preprocessing, Software

Documentation

Download

Dependencies

Imports: graphics, grDevices, methods, ncdf4, stats, utils, assertthat

Suggests: TargetSearchData, BiocStyle, knitr, tinytest