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TabulaMurisSenisData

Bulk and single-cell RNA-seq data from the Tabula Muris Senis project

Bioconductor version: 3.23 · Package version: 1.18.0

This package provides access to RNA-seq data generated by the Tabula Muris Senis project via the Bioconductor project. The data is made available without restrictions by the Chan Zuckerberg Biohub. It is provided here without further processing, collected in the form of SingleCellExperiment objects.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TabulaMurisSenisData")

Details

MaintainerCharlotte Soneson <charlottesoneson@gmail.com>
AuthorCharlotte Soneson [aut, cre] (ORCID: <https://orcid.org/0000-0003-3833-2169>), Dania Machlab [aut] (ORCID: <https://orcid.org/0000-0002-2578-6930>), Federico Marini [aut] (ORCID: <https://orcid.org/0000-0003-3252-7758>), Stefania Astrologo [aut] (ORCID: <https://orcid.org/0000-0002-4845-2802>)
LicenseMIT + file LICENSE
URLhttps://github.com/fmicompbio/TabulaMurisSenisData
Bug Reportshttps://github.com/fmicompbio/TabulaMurisSenisData/issues
Downloads rank178
Source branchRELEASE_3_23
biocViewsExperimentData, ExperimentHub, RNASeqData, SingleCellData

Download

Dependencies

Imports: ExperimentHub, SingleCellExperiment, HDF5Array, SummarizedExperiment, gdata, AnnotationHub

Suggests: ggplot2, testthat, knitr, rmarkdown, iSEE, BiocStyle

Reverse dependencies

Suggests Me (2): SETA, SPOTlight