TRESS

Toolbox for mRNA epigenetics sequencing analysis

Bioconductor version: 3.23 · Package version: 1.18.0

This package is devoted to analyzing MeRIP-seq data. Current functionalities include 1. detect transcriptome wide m6A methylation regions 2. detect transcriptome wide differential m6A methylation regions.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TRESS")

Details

Maintainer	Zhenxing Guo <guozhenxing@cuhk.edu.cn>
Author	Zhenxing Guo [aut, cre], Hao Wu [ctb]
License	GPL-3 + file LICENSE
Downloads rank	280
Source branch	RELEASE_3_23
biocViews	DifferentialMethylation, Epigenetics, PeakDetection, RNASeq, Software

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Source package

Dependencies

Depends: R (>= 4.1.0), parallel, S4Vectors

Imports: utils, rtracklayer, Matrix, matrixStats, stats, methods, graphics, GenomicRanges, GenomicFeatures, IRanges, Rsamtools, AnnotationDbi

Suggests: knitr, rmarkdown, BiocStyle

Reverse dependencies

Imports Me (1): magpie