TPP

Analyze thermal proteome profiling (TPP) experiments

Bioconductor version: 3.23 · Package version: 3.40.0

Analyze thermal proteome profiling (TPP) experiments with varying temperatures (TR) or compound concentrations (CCR).

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TPP")

Maintainer	Dorothee Childs <d.childs@posteo.de>
Author	Dorothee Childs [cre, aut], Nils Kurzawa [aut], Holger Franken [aut], Carola Doce [aut], Mikhail Savitski [aut], Wolfgang Huber [aut]
License	Artistic-2.0
Downloads rank	472
Source branch	RELEASE_3_23
biocViews	ImmunoOncology, MassSpectrometry, Proteomics, Software

Dependencies

Depends: R (>= 3.4), Biobase, dplyr, magrittr, tidyr

Imports: biobroom, data.table, doParallel, foreach, futile.logger, ggplot2, grDevices, gridExtra, grid, knitr, limma, MASS, mefa, nls2, openxlsx (>= 2.4.0), parallel, plyr, purrr, RColorBrewer, RCurl, reshape2, rlang, rmarkdown, splines, stats, stringr, tibble, utils, VennDiagram, VGAM

Suggests: BiocStyle, testthat

Reverse dependencies

Suggests Me (1): Rtpca