TFutils

Bioconductor version: 3.23 · Package version: 1.32.0

This package helps users to work with TF metadata from various sources. Significant catalogs of TFs and classifications thereof are made available. Tools for working with motif scans are also provided.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TFutils")

Details

Maintainer	Vincent Carey <stvjc@channing.harvard.edu>
Author	Vincent Carey [aut, cre], Shweta Gopaulakrishnan [aut]
License	Artistic-2.0
Downloads rank	382
Source branch	RELEASE_3_23
biocViews	Software, Transcriptomics

Documentation

Download

Source package

Dependencies

Depends: R (>= 4.1.0)

Imports: methods, dplyr, magrittr, miniUI, shiny, Rsamtools, GSEABase, rjson, BiocFileCache, DT, httr, readxl, AnnotationDbi, org.Hs.eg.db, utils, GenomicFiles, SummarizedExperiment

Suggests: knitr, data.table, testthat, AnnotationFilter, Biobase, GenomicFeatures, GenomicRanges, Gviz, IRanges, S4Vectors, EnsDb.Hsapiens.v75, BiocParallel, BiocStyle, GO.db, Seqinfo, UpSetR, ggplot2, png, gwascat, MotifDb, motifStack, RColorBrewer, rmarkdown