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TENxXeniumData

Collection of Xenium spatial data by 10X genomics

Bioconductor version: 3.23 · Package version: 1.8.0

Collection of Xenium spatial transcriptomics datasets provided by 10x Genomics, formatted into the Bioconductor classes, the SpatialExperiment or SpatialFeatureExperiment (SFE), to facilitate seamless integration into various applications, including examples, demonstrations, and tutorials. The constructed data objects include gene expression profiles, per-transcript location data, centroid, segmentation boundaries (e.g., cell or nucleus boundaries), and image.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TENxXeniumData")

Details

MaintainerMatineh Rahmatbakhsh <matinerb.94@gmail.com>
AuthorMatineh Rahmatbakhsh [aut, cre], Monica Ge [aut]
LicenseMIT + file LICENSE
URLhttps://github.com/mrbakhsh/TENxXeniumData
Bug Reportshttps://github.com/mrbakhsh/TENxXeniumData/issues
Downloads rank93
Source branchRELEASE_3_23
biocViewsExperimentData, ExperimentHub, SpatialData

Download

Dependencies

Depends: ExperimentHub

Imports: SpatialExperiment, SpatialFeatureExperiment, BumpyMatrix, SummarizedExperiment, utils

Suggests: BiocStyle, knitr, rmarkdown

Reverse dependencies

Suggests Me (1): jazzPanda