TENxXeniumData
Collection of Xenium spatial data by 10X genomics
Bioconductor version: 3.23 · Package version: 1.8.0
Collection of Xenium spatial transcriptomics datasets provided by 10x Genomics, formatted into the Bioconductor classes, the SpatialExperiment or SpatialFeatureExperiment (SFE), to facilitate seamless integration into various applications, including examples, demonstrations, and tutorials. The constructed data objects include gene expression profiles, per-transcript location data, centroid, segmentation boundaries (e.g., cell or nucleus boundaries), and image.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("TENxXeniumData") Details
| Maintainer | Matineh Rahmatbakhsh <matinerb.94@gmail.com> |
| Author | Matineh Rahmatbakhsh [aut, cre], Monica Ge [aut] |
| License | MIT + file LICENSE |
| URL | https://github.com/mrbakhsh/TENxXeniumData |
| Bug Reports | https://github.com/mrbakhsh/TENxXeniumData/issues |
| Downloads rank | 93 |
| Source branch | RELEASE_3_23 |
| biocViews | ExperimentData, ExperimentHub, SpatialData |
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Dependencies
Depends: ExperimentHub
Imports: SpatialExperiment, SpatialFeatureExperiment, BumpyMatrix, SummarizedExperiment, utils
Reverse dependencies
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