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TENxVisiumData

Visium spatial gene expression data by 10X Genomics

Bioconductor version: 3.23 · Package version: 1.20.0

Collection of Visium spatial gene expression datasets by 10X Genomics, formatted into objects of class SpatialExperiment. Data cover various organisms and tissues, and include: single- and multi-section experiments, as well as single sections subjected to both whole transcriptome and targeted panel analysis. Datasets may be used for testing of and as examples in packages, for tutorials and workflow demonstrations, or similar purposes.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TENxVisiumData")

Details

MaintainerHelena L. Crowell <helena@crowell.eu>
AuthorHelena L. Crowell [aut, cre] (ORCID: <https://orcid.org/0000-0002-4801-1767>)
LicenseMIT + file LICENSE
URLhttps://github.com/helenalc/TENxVisiumData
Bug Reportshttps://github.com/helenalc/TENxVisiumData/issues
Downloads rank198
Source branchRELEASE_3_23
biocViewsExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Mus_musculus_Data, ReproducibleResearch

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Dependencies

Depends: ExperimentHub, SpatialExperiment

Imports: utils

Suggests: BiocStyle, knitr, rmarkdown

Reverse dependencies

Suggests Me (2): GSVA, SPOTlight