TENET.ExperimentHub

Experiment data for the TENET package

Bioconductor version: 3.23 · Package version: 1.4.0

ExperimentHub package containing datasets for use in the TENET package's vignette and function examples. These include a variety of different objects to illustrate different datasets used in TENET functions. Where applicable, all datasets are aligned to the hg38 human genome.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TENET.ExperimentHub")

Details

Maintainer	Rhie Lab at the University of Southern California <rhielab@gmail.com>
Author	Rhie Lab at the University of Southern California [cre], Daniel Mullen [aut] (ORCID: <https://orcid.org/0000-0002-7639-0549>), Zexun Wu [aut] (ORCID: <https://orcid.org/0000-0003-2566-1326>), Ethan Nelson-Moore [aut] (ORCID: <https://orcid.org/0009-0001-6903-9232>), Suhn Rhie [aut] (ORCID: <https://orcid.org/0000-0002-5522-5296>)
License	GPL-2
URL	https://github.com/rhielab/TENET.ExperimentHub
Bug Reports	https://github.com/rhielab/TENET.ExperimentHub/issues
Downloads rank	83
Source branch	RELEASE_3_23
biocViews	BreastCancerData, CancerData, CellCulture, ExperimentData, ExperimentHub, ExpressionData, Genome, Homo_sapiens_Data, MethylationArrayData, MicroarrayData, RNASeqData, Tissue

Download

Source package

Dependencies

Depends: R (>= 4.5), ggplot2 (>= 4.0)

Imports: ExperimentHub, SummarizedExperiment, MultiAssayExperiment, GenomicRanges, methods

Suggests: TENET, ExperimentHubData, testthat (>= 3.0.0), BiocManager, knitr, rmarkdown, BiocStyle

Reverse dependencies

Imports Me (1): TENET