TENET.AnnotationHub

Annotation data for the TENET package

Bioconductor version: 3.23 · Package version: 1.1.0

AnnotationHub package containing datasets for use in the TENET package. Includes GenomicRanges objects representing putative enhancer, promoter, and open chromatin regions. All included datasets are aligned to the hg38 human genome.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TENET.AnnotationHub")

Details

Maintainer	Rhie Lab at the University of Southern California <rhielab@gmail.com>
Author	Rhie Lab at the University of Southern California [cre], Daniel Mullen [aut] (ORCID: <https://orcid.org/0000-0002-7639-0549>), Zexun Wu [aut] (ORCID: <https://orcid.org/0000-0003-2566-1326>), Ethan Nelson-Moore [aut] (ORCID: <https://orcid.org/0009-0001-6903-9232>), Suhn Rhie [aut] (ORCID: <https://orcid.org/0000-0002-5522-5296>)
License	GPL-2
URL	https://github.com/rhielab/TENET.AnnotationHub
Bug Reports	https://github.com/rhielab/TENET.AnnotationHub/issues
Downloads rank	24
Source branch	RELEASE_3_23
biocViews	AnnotationData, AnnotationHub, GenomicSequence, Homo_sapiens

Download

Source package

Dependencies

Depends: R (>= 4.4)

Imports: AnnotationHub, GenomicRanges

Suggests: TENET, AnnotationHubData, testthat (>= 3.0.0), BiocManager, knitr, rmarkdown, BiocStyle

Reverse dependencies

Suggests Me (1): TENET