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SynExtend

Tools for Comparative Genomics

Bioconductor version: 3.23 · Package version: 1.24.0

A multitude of tools for comparative genomics, focused on large-scale analyses of biological data. SynExtend includes tools for working with syntenic data, clustering massive network structures, and estimating functional relationships among genes.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SynExtend")

Details

MaintainerNicholas Cooley <npc19@pitt.edu>
AuthorNicholas Cooley [aut, cre] (ORCID: <https://orcid.org/0000-0002-6029-304X>), Aidan Lakshman [aut, ctb] (ORCID: <https://orcid.org/0000-0002-9465-6785>), Adelle Fernando [ctb], Erik Wright [aut]
LicenseGPL-3
URLhttps://github.com/npcooley/SynExtend
Bug Reportshttps://github.com/npcooley/SynExtend/issues/new/
Downloads rank308
Source branchRELEASE_3_23
biocViewsClustering, ComparativeGenomics, DataImport, Genetics, Software

Documentation

Download

Dependencies

Depends: R (>= 4.5.0), DECIPHER (>= 2.28.0)

Imports: methods, Biostrings, S4Vectors, IRanges, utils, stats, parallel, graphics, grDevices, RSQLite, DBI

Suggests: BiocStyle, knitr, igraph, markdown, rmarkdown