SuperCellCyto
SuperCell For Cytometry Data
Bioconductor version: 3.23 · Package version: 1.2.0
SuperCellCyto provides the ability to summarise cytometry data into supercells by merging together cells that are similar in their marker expressions using the SuperCell package.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SuperCellCyto")Details
| Maintainer | Givanna Putri <givanna.h@gmail.com> |
| Author | Givanna Putri [aut, cre] (ORCID: <https://orcid.org/0000-0002-7399-8014>), George Howitt [aut], Felix Marsh-Wakefield [aut], Thomas Ashhurst [aut], Belinda Phipson [aut] |
| License | GPL-3 + file LICENSE |
| URL | https://phipsonlab.github.io/SuperCellCyto/ |
| Bug Reports | https://github.com/phipsonlab/SuperCellCyto/issues |
| Downloads rank | 126 |
| Source branch | RELEASE_3_23 |
| biocViews | CellBiology, FlowCytometry, SingleCell, Software |
Documentation
- How to create supercells
- How to Prepare Data for SuperCellCyto
- Interoperability with Seurat
- Interoperability with SingleCellExperiment
- Using SuperCellCyto for Stratified Summarising
Download
Dependencies
Imports: SuperCell, data.table, Matrix, BiocParallel
Suggests: flowCore, knitr, rmarkdown, usethis, testthat (>= 3.0.0), BiocSingular, bluster, scater, scran, Seurat, SingleCellExperiment, BiocStyle, magick, qs2