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SpatialDatasets

Collection of spatial omics datasets

Bioconductor version: 3.23 · Package version: 1.10.0

This is a collection of publically available spatial omics datasets. Where possible we have curated these datasets as either SpatialExperiments, MoleculeExperiments or CytoImageLists and included annotations of the sample characteristics.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SpatialDatasets")

Details

MaintainerEllis Patrick <ellis.patrick@sydney.edu.au>
AuthorFarhan Ameen [aut], Nick Robertson [aut], Alex Qin [aut], Shreya Rao [aut], Elijah Willie [aut], Ellis Patrick [aut, cre]
LicenseGPL-3
URLhttps://github.com/SydneyBioX/SpatialDatasets
Bug Reportshttps://github.com/SydneyBioX/SpatialDatasets/issues
Downloads rank114
Source branchRELEASE_3_23
biocViewsExperimentData, ExperimentHub, Homo_sapiens_Data, Mus_musculus_Data, ReproducibleResearch, SingleCellData, SpatialData

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Dependencies

Depends: ExperimentHub, SpatialExperiment

Imports: utils

Suggests: BiocStyle, knitr, rmarkdown, cytomapper

Reverse dependencies

Suggests Me (2): lisaClust, spicyR