SingleCellExperiment

Depends On Me (74): alabaster.sce, BASiCS, batchelor, BayesSpace, CATALYST, celda, CellBench, CelliD, CellTrails, CHETAH, chevreulPlot, chevreulProcess, chevreulShiny, clusterExperiment, cydar, cytomapper, DeeDeeExperiment, demuxSNP, DIscBIO, dreamlet, DropletUtils, epiregulon, epiregulon.extra, ExperimentSubset, GraphExperiment, HCAData, imcdatasets, imcExperiment, iSEE, iSEEhub, iSEEindex, karyotapR, LoomExperiment, MAST, mia, MouseAgingData, MouseGastrulationData, MouseThymusAgeing, mumosa, muscData, omicsGMF, POWSC, scAnnotatR, scATAC.Explorer, scater, scDataviz, scDblFinder, scGPS, schex, scMultiome, scPipe, scran, scRNAseq, scuttle, scviR, simPIC, SingleCellAlleleExperiment, singleCellTK, SiPSiC, SpatialExperiment, splatter, STexampleData, switchde, TENxBrainData, TENxIO, TENxPBMCData, tidySingleCellExperiment, TMExplorer, TrajectoryUtils, TreeSummarizedExperiment, tricycle, TSCAN, WeberDivechaLCdata, zinbwave

Imports Me (180): ADImpute, aggregateBioVar, airpart, alabaster.sfe, anansi, anglemania, APL, ASURAT, atacInferCnv, Banksy, BASiCStan, BatChef, bayNorm, blase, BUSseq, CARDspa, CatsCradle, ccfindR, ccImpute, CDI, CellMentor, CellMixS, Cepo, ChromSCape, CiteFuse, ClusterFoldSimilarity, ClusterGVis, clustifyr, clustSIGNAL, CoGAPS, concordexR, condiments, Coralysis, corral, COTAN, crumblr, CTexploreR, CuratedAtlasQueryR, cytofQC, cytoviewer, dandelionR, decontX, DeconvoBuddies, destiny, DifferentialRegulation, Dino, distinct, dittoSeq, DOtools, EMTscoreData, escheR, EWCE, FEAST, fishpond, FLAMES, ggsc, ggspavis, glmGamPoi, GloScope, GSVA, HCATonsilData, HIPPO, Ibex, ILoReg, imageFeatureTCGA, imcRtools, immApex, immLynx, infercnv, iSEEfier, iSEEtree, iSEEu, lemur, lisaClust, looking4clusters, mastR, mbkmeans, MEB, MerfishData, MetaNeighbor, miaDash, miaTime, miaViz, mikropml, miloR, miQC, mist, mixhvg, MPAC, MuData, muscat, Nebulosa, netSmooth, NewWave, nnSVG, partCNV, peco, pipeComp, projectR, raer, raerdata, RCSL, RegionalST, RUCova, SanityR, SC3, scafari, SCArray, scBFA, scCB2, sccomp, scDD, scDDboost, scDesign3, scDiagnostics, scDotPlot, scds, scGraphVerse, scHOT, scider, scLang, scmap, scMerge, scMET, SCnorm, scone, scp, scpdata, scQTLtools, scReClassify, scRepertoire, scRNAseqApp, scROSHI, scruff, scry, scTensor, scTGIF, scTreeViz, SETA, shinyDSP, singIST, SingleCellMultiModal, slalom, slingshot, sosta, Spaniel, SpaNorm, SpatialExperimentIO, SpatialFeatureExperiment, spatialHeatmap, spatialLIBD, speckle, spicyR, SplineDV, SpNeigh, SPOTlight, SpotSweeper, SPsimSeq, standR, StatescopeR, Statial, stPipe, SVP, TabulaMurisSenisData, tidySpatialExperiment, tpSVG, tradeSeq, treekoR, UCell, VAExprs, VDJdive, velociraptor, VisiumIO, visiumStitched, Voyager, waddR, xCell2, XeniumIO, xenLite, zellkonverter

Suggests Me (69): ANCOMBC, anndataR, Canek, cellxgenedp, clustree, CTdata, CytoSimplex, DEsingle, dominoSignal, dorothea, DuoClustering2018, dyngen, escape, FuseSOM, futurize, gedi2, genomicInstability, GEOquery, ggmlR, GSE103322, harmony, hca, HDF5Array, HVP, InteractiveComplexHeatmap, jazzPanda, lstar, M3Drop, microbiomeDataSets, microSTASIS, MOFA2, MOSim, nebula, nemoR, ontoProc, phenopath, PIUMA, progeny, QFeatures, RaceID, radEmu, RankMap, ReactomeGSA, rliger, scBubbletree, scConform, scFeatureFilter, scLANE, scPassport, scPCA, scrapper, scRecover, scToppR, scTypeEval, Seqtometry, Seurat, simpleSingleCell, singleCellHaystack, SingleR, sketchR, SummarizedExperiment, SuperCell, SuperCellCyto, SVG, TabulaMurisData, tidydr, tidytof, TREG, updateObject