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SanityR

R/Bioconductor interface to the Sanity model gene expression analysis

Bioconductor version: 3.23 · Package version: 1.2.0

a Bayesian normalization procedure derived from first principles. Sanity estimates expression values and associated error bars directly from raw unique molecular identifier (UMI) counts without any tunable parameters.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SanityR")

Details

MaintainerTeo Sakel <teo@intelligentbiodata.com>
AuthorTeo Sakel [aut, cre] (ORCID: <https://orcid.org/0000-0001-9946-9498>), MCIU/AEI [fnd] (ROR: <https://ror.org/05r0vyz12>, DOI: 10.13039/501100011033)
LicenseGPL (>= 3)
URLhttps://github.com/TeoSakel/SanityR
Bug Reportshttps://github.com/TeoSakel/SanityR/issues
Downloads rank128
Source branchRELEASE_3_23
biocViewsBayesian, GeneExpression, Normalization, SingleCell, Software

Documentation

Download

Dependencies

Imports: Rcpp, BiocGenerics, BiocParallel, MatrixGenerics, methods, S4Vectors, scuttle, SingleCellExperiment, SummarizedExperiment

LinkingTo: Rcpp

Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), scater, Rtsne