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SWATH2stats

Transform and Filter SWATH Data for Statistical Packages

Bioconductor version: 3.23 · Package version: 1.42.0

This package is intended to transform SWATH data from the OpenSWATH software into a format readable by other statistics packages while performing filtering, annotation and FDR estimation.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SWATH2stats")

Details

MaintainerPeter Blattmann <peter_blattmann@bluewin.ch>
AuthorPeter Blattmann [aut, cre] Moritz Heusel [aut] Ruedi Aebersold [aut]
LicenseGPL-3
URLhttps://peterblattmann.github.io/SWATH2stats/
Bug Reportshttps://github.com/peterblattmann/SWATH2stats
Downloads rank302
Source branchRELEASE_3_23
biocViewsAnnotation, ExperimentalDesign, ImmunoOncology, MassSpectrometry, Preprocessing, Proteomics, Software

Documentation

Download

Dependencies

Depends: R (>= 2.10.0)

Imports: data.table, reshape2, ggplot2, stats, grDevices, graphics, utils, biomaRt, methods

Suggests: testthat, knitr, rmarkdown

Enhances: MSstats, PECA, aLFQ