STexampleData
Collection of spatial transcriptomics datasets in SpatialExperiment Bioconductor format
Bioconductor version: 3.23 · Package version: 1.20.1
Collection of spatial transcriptomics datasets stored in SpatialExperiment Bioconductor format, for use in examples, demonstrations, and tutorials. The datasets are from several different platforms and have been sourced from various publicly available sources. Several datasets include images and/or reference annotation labels.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("STexampleData") Details
| Maintainer | Lukas M. Weber <weberlm3@gmail.com> |
| Author | Lukas M. Weber [aut, cre] (ORCID: <https://orcid.org/0000-0002-3282-1730>), Yixing E. Dong [aut] (ORCID: <https://orcid.org/0009-0003-5115-5686>) |
| License | MIT + file LICENSE |
| URL | https://github.com/lmweber/STexampleData |
| Bug Reports | https://github.com/lmweber/STexampleData/issues |
| Downloads rank | 349 |
| Source branch | RELEASE_3_23 |
| biocViews | ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Mus_musculus_Data, ReproducibleResearch, SingleCellData, SpatialData |
Download
Dependencies
Depends: ExperimentHub, SingleCellExperiment, SpatialExperiment
Imports: utils
Suggests: BiocStyle, knitr, rmarkdown, BumpyMatrix, HDF5Array
Reverse dependencies
Suggests Me (13): Battlefield, BulkSignalR, escheR, ggsc, ggspavis, nnSVG, poem, smoothclust, spatialSimGP, spoon, SpotSweeper, SVP, tpSVG