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STexampleData

Collection of spatial transcriptomics datasets in SpatialExperiment Bioconductor format

Bioconductor version: 3.23 · Package version: 1.20.1

Collection of spatial transcriptomics datasets stored in SpatialExperiment Bioconductor format, for use in examples, demonstrations, and tutorials. The datasets are from several different platforms and have been sourced from various publicly available sources. Several datasets include images and/or reference annotation labels.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("STexampleData")

Details

MaintainerLukas M. Weber <weberlm3@gmail.com>
AuthorLukas M. Weber [aut, cre] (ORCID: <https://orcid.org/0000-0002-3282-1730>), Yixing E. Dong [aut] (ORCID: <https://orcid.org/0009-0003-5115-5686>)
LicenseMIT + file LICENSE
URLhttps://github.com/lmweber/STexampleData
Bug Reportshttps://github.com/lmweber/STexampleData/issues
Downloads rank349
Source branchRELEASE_3_23
biocViewsExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Mus_musculus_Data, ReproducibleResearch, SingleCellData, SpatialData

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Dependencies

Depends: ExperimentHub, SingleCellExperiment, SpatialExperiment

Imports: utils

Suggests: BiocStyle, knitr, rmarkdown, BumpyMatrix, HDF5Array

Reverse dependencies

Suggests Me (13): Battlefield, BulkSignalR, escheR, ggsc, ggspavis, nnSVG, poem, smoothclust, spatialSimGP, spoon, SpotSweeper, SVP, tpSVG