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SQLDataFrame

Representation of SQL tables in DataFrame metaphor

Bioconductor version: 3.23 · Package version: 1.26.0

Implements bindings for SQL tables that are compatible with Bioconductor S4 data structures, namely the DataFrame and DelayedArray. This allows SQL-derived data to be easily used inside other Bioconductor objects (e.g., SummarizedExperiments) while keeping everything on disk.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SQLDataFrame")

Details

MaintainerQian Liu <Qian.Liu@RoswellPark.org>
AuthorQian Liu [aut, cre] (ORCID: <https://orcid.org/0000-0003-1456-5099>), Aaron Lun [aut], Martin Morgan [aut]
LicenseLGPL (>= 3); File LICENSE
URLhttps://github.com/Bioconductor/SQLDataFrame
Bug Reportshttps://github.com/Bioconductor/SQLDataFrame/issues
StatusDeprecated
Downloads rank176
Source branchRELEASE_3_23
biocViewsDataRepresentation, Infrastructure, Software

Documentation

Download

Dependencies

Depends: DelayedArray, S4Vectors

Imports: stats, utils, methods, BiocGenerics, RSQLite, duckdb, DBI

Suggests: knitr, rmarkdown, BiocStyle, testthat