SNPlocs.Hsapiens.dbSNP155.GRCh38
Human SNP locations and alleles extracted from dbSNP Build 155 and placed on the GRCh38/hg38 assembly
Bioconductor version: 3.23 · Package version: 0.99.24
The 949,021,448 SNPs in this package were extracted from the RefSNP JSON files for chromosomes 1-22, X, Y, and MT, located at https://ftp.ncbi.nih.gov/snp/archive/b155/JSON/ (these files were created by NCBI in May 2021). These SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or BSgenome.Hsapiens.UCSC.hg38.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SNPlocs.Hsapiens.dbSNP155.GRCh38") Details
| Maintainer | Hervé Pagès <hpages.on.github@gmail.com> |
| Author | Hervé Pagès |
| License | Artistic-2.0 |
| Downloads rank | 443 |
| Source branch | RELEASE_3_23 |
| biocViews | AnnotationData, Genetics, Homo_sapiens, SNPlocs |
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Dependencies
Depends: R (>= 4.2.0), BSgenome (>= 1.67.2)
Imports: methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome
Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg38
Reverse dependencies
Suggests Me (1): MungeSumstats