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SNPlocs.Hsapiens.dbSNP155.GRCh38

Human SNP locations and alleles extracted from dbSNP Build 155 and placed on the GRCh38/hg38 assembly

Bioconductor version: 3.23 · Package version: 0.99.24

The 949,021,448 SNPs in this package were extracted from the RefSNP JSON files for chromosomes 1-22, X, Y, and MT, located at https://ftp.ncbi.nih.gov/snp/archive/b155/JSON/ (these files were created by NCBI in May 2021). These SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or BSgenome.Hsapiens.UCSC.hg38.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SNPlocs.Hsapiens.dbSNP155.GRCh38")

Details

MaintainerHervé Pagès <hpages.on.github@gmail.com>
AuthorHervé Pagès
LicenseArtistic-2.0
Downloads rank443
Source branchRELEASE_3_23
biocViewsAnnotationData, Genetics, Homo_sapiens, SNPlocs

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Dependencies

Depends: R (>= 4.2.0), BSgenome (>= 1.67.2)

Imports: methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome

Suggests: Biostrings, BSgenome.Hsapiens.UCSC.hg38

Reverse dependencies

Suggests Me (1): MungeSumstats