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SFEData

Example SpatialFeatureExperiment datasets

Bioconductor version: 3.23 · Package version: 1.14.0

Example spatial transcriptomics datasets with Simple Feature annotations as SpatialFeatureExperiment objects. Technologies include Visium, slide-seq, Nanostring CoxMX, Vizgen MERFISH, and 10X Xenium. Tissues include mouse skeletal muscle, human melanoma metastasis, human lung, breast cancer, and mouse liver.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SFEData")

Details

MaintainerLambda Moses <dlu2@caltech.edu>
AuthorLambda Moses [aut, cre] (ORCID: <https://orcid.org/0000-0002-7092-9427>), Alik Huseynov [aut] (ORCID: <https://orcid.org/0000-0002-1438-4389>), Kayla Jackson [aut] (ORCID: <https://orcid.org/0000-0001-6483-0108>), Lior Pachter [aut, ths] (ORCID: <https://orcid.org/0000-0002-9164-6231>)
LicenseArtistic-2.0
URLhttps://github.com/pachterlab/SFEData
Bug Reportshttps://github.com/pachterlab/SFEData/issues
Downloads rank153
Source branchRELEASE_3_23
biocViewsExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Mus_musculus_Data, SingleCellData, SpatialData, Tissue

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Dependencies

Depends: R (>= 4.1.0)

Imports: BiocFileCache, AnnotationHub, ExperimentHub, utils

Suggests: BiocStyle, knitr, rmarkdown, SeuratObject, SpatialFeatureExperiment, testthat (>= 3.0.0)

Reverse dependencies

Suggests Me (6): alabaster.sfe, concordexR, jazzPanda, SpatialFeatureExperiment, Voyager, xenLite