SFEData
Example SpatialFeatureExperiment datasets
Bioconductor version: 3.23 · Package version: 1.14.0
Example spatial transcriptomics datasets with Simple Feature annotations as SpatialFeatureExperiment objects. Technologies include Visium, slide-seq, Nanostring CoxMX, Vizgen MERFISH, and 10X Xenium. Tissues include mouse skeletal muscle, human melanoma metastasis, human lung, breast cancer, and mouse liver.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SFEData") Details
| Maintainer | Lambda Moses <dlu2@caltech.edu> |
| Author | Lambda Moses [aut, cre] (ORCID: <https://orcid.org/0000-0002-7092-9427>), Alik Huseynov [aut] (ORCID: <https://orcid.org/0000-0002-1438-4389>), Kayla Jackson [aut] (ORCID: <https://orcid.org/0000-0001-6483-0108>), Lior Pachter [aut, ths] (ORCID: <https://orcid.org/0000-0002-9164-6231>) |
| License | Artistic-2.0 |
| URL | https://github.com/pachterlab/SFEData |
| Bug Reports | https://github.com/pachterlab/SFEData/issues |
| Downloads rank | 153 |
| Source branch | RELEASE_3_23 |
| biocViews | ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Mus_musculus_Data, SingleCellData, SpatialData, Tissue |
Download
Dependencies
Depends: R (>= 4.1.0)
Imports: BiocFileCache, AnnotationHub, ExperimentHub, utils
Suggests: BiocStyle, knitr, rmarkdown, SeuratObject, SpatialFeatureExperiment, testthat (>= 3.0.0)
Reverse dependencies
Suggests Me (6): alabaster.sfe, concordexR, jazzPanda, SpatialFeatureExperiment, Voyager, xenLite