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SANTA

Spatial Analysis of Network Associations

Bioconductor version: 3.23 · Package version: 2.48.0

This package provides methods for measuring the strength of association between a network and a phenotype. It does this by measuring clustering of the phenotype across the network (Knet). Vertices can also be individually ranked by their strength of association with high-weight vertices (Knode).

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SANTA")

Details

MaintainerAlex Cornish <alexcornish88@gmail.com>
AuthorAlex Cornish [cre, aut]
LicenseGPL (>= 2)
Bug Reportshttps://github.com/alexjcornish/SANTA
Downloads rank339
Source branchRELEASE_3_23
biocViewsClustering, Network, NetworkEnrichment, Software

Documentation

Download

Dependencies

Depends: R (>= 4.1), igraph

Imports: graphics, Matrix, methods, stats

Suggests: BiocGenerics, BioNet, formatR, knitr, msm, org.Sc.sgd.db, markdown, rmarkdown, RUnit