SANTA
Spatial Analysis of Network Associations
Bioconductor version: 3.23 · Package version: 2.48.0
This package provides methods for measuring the strength of association between a network and a phenotype. It does this by measuring clustering of the phenotype across the network (Knet). Vertices can also be individually ranked by their strength of association with high-weight vertices (Knode).
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SANTA") Details
| Maintainer | Alex Cornish <alexcornish88@gmail.com> |
| Author | Alex Cornish [cre, aut] |
| License | GPL (>= 2) |
| Bug Reports | https://github.com/alexjcornish/SANTA |
| Downloads rank | 339 |
| Source branch | RELEASE_3_23 |
| biocViews | Clustering, Network, NetworkEnrichment, Software |
Documentation
Download
Dependencies
Depends: R (>= 4.1), igraph
Imports: graphics, Matrix, methods, stats
Suggests: BiocGenerics, BioNet, formatR, knitr, msm, org.Sc.sgd.db, markdown, rmarkdown, RUnit