S4Arrays
Foundation of array-like containers in Bioconductor
Bioconductor version: 3.23 · Package version: 1.12.0
The S4Arrays package defines the Array virtual class to be extended by other S4 classes that wish to implement a container with an array-like semantic. It also provides: (1) low-level functionality meant to help the developer of such container to implement basic operations like display, subsetting, or coercion of their array-like objects to an ordinary matrix or array, and (2) a framework that facilitates block processing of array-like objects (typically on-disk objects).
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("S4Arrays") Details
| Maintainer | Hervé Pagès <hpages.on.github@gmail.com> |
| Author | Hervé Pagès [aut, cre] (ORCID: <https://orcid.org/0009-0002-8272-4522>), Jacques Serizay [ctb] |
| License | Artistic-2.0 |
| URL | https://bioconductor.org/packages/S4Arrays |
| Bug Reports | https://github.com/Bioconductor/S4Arrays/issues |
| Downloads rank | 50199 |
| Source branch | RELEASE_3_23 |
| biocViews | DataRepresentation, Infrastructure, Software |
Documentation
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Dependencies
Depends: R (>= 4.3.0), methods, Matrix, abind, BiocGenerics (>= 0.45.2), S4Vectors (>= 0.47.6), IRanges
Imports: stats
LinkingTo: S4Vectors
Suggests: BiocParallel, SparseArray (>= 0.0.4), DelayedArray, HDF5Array, testthat, knitr, rmarkdown, BiocStyle
Reverse dependencies
Depends On Me (2): DelayedArray, SparseArray
Imports Me (12): alabaster.matrix, DelayedTensor, dreamlet, FLAMES, GSVA, h5mread, HDF5Array, ImageArray, scran, scuttle, SummarizedExperiment, ZarrArray
Suggests Me (1): BiocGenerics