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Rvisdiff

Interactive Graphs for Differential Expression

Bioconductor version: 3.23 · Package version: 1.10.0

Creates a muti-graph web page which allows the interactive exploration of differential analysis tests. The graphical web interface presents results as a table which is integrated with five interactive graphs: MA-plot, volcano plot, box plot, lines plot and cluster heatmap. Graphical aspect and information represented in the graphs can be customized by means of user controls. Final graphics can be exported as PNG format.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rvisdiff")

Details

MaintainerDavid Barrios <metal@usal.es>
AuthorCarlos Prieto [aut] (ORCID: <https://orcid.org/0000-0003-2064-4842>), David Barrios [cre, aut] (ORCID: <https://orcid.org/0000-0003-4465-0200>)
LicenseGPL-2 | GPL-3
URLhttps://github.com/BioinfoUSAL/Rvisdiff/
Bug Reportshttps://github.com/BioinfoUSAL/Rvisdiff/issues/
Downloads rank207
Source branchRELEASE_3_23
biocViewsDataRepresentation, DifferentialExpression, RNASeq, Software, Visualization

Documentation

Download

Dependencies

Depends: R (>= 4.5.0)

Imports: edgeR, utils

Suggests: knitr, rmarkdown, DESeq2, limma, SummarizedExperiment, airway, BiocStyle, matrixTests, BiocManager