RiboCrypt

Interactive visualization in genomics

Bioconductor version: 3.23 · Package version: 1.18.0

R Package for interactive visualization and browsing NGS data. It contains a browser for both transcript and genomic coordinate view. In addition a QC and general metaplots are included, among others differential translation plots and gene expression plots. The package is still under development.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RiboCrypt")

Details

Maintainer	Michal Swirski <michal.swirski@uw.edu.pl>
Author	Michal Swirski [aut, cre, cph], Haakon Tjeldnes [aut, ctb], Kornel Labun [ctb]
License	MIT + file LICENSE
URL	https://github.com/m-swirski/RiboCrypt
Bug Reports	https://github.com/m-swirski/RiboCrypt/issues
Downloads rank	301
Source branch	RELEASE_3_23
biocViews	RNASeq, RiboSeq, Sequencing, Software

Documentation

Download

Source package

Dependencies

Depends: R (>= 3.6.0), ORFik (>= 1.13.12)

Imports: bslib, BiocGenerics, BiocParallel, Biostrings, ComplexHeatmap, cowplot, crosstalk, data.table, dplyr, DT, fst, Seqinfo, GenomicFeatures, GenomicRanges, ggplot2, grid, htmlwidgets, httr, IRanges, jsonlite, knitr, markdown, NGLVieweR, plotly, rlang, rclipboard, RCurl, rtracklayer, shiny, shinycssloaders, shinyhelper, shinyjs, shinyjqui, shinyWidgets, stringr, writexl

Suggests: testthat, rmarkdown, BiocStyle, BSgenome, BSgenome.Hsapiens.UCSC.hg19