Rhtslib
HTSlib high-throughput sequencing library as an R package
Bioconductor version: 3.23 · Package version: 3.8.0
This package provides version 1.18 of the 'HTSlib' C library for high-throughput sequence analysis. The package is primarily useful to developers of other R packages who wish to make use of HTSlib. Motivation and instructions for use of this package are in the vignette, vignette(package="Rhtslib", "Rhtslib").
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Rhtslib")Details
| Maintainer | Hervé Pagès <hpages.on.github@gmail.com> |
| Author | Nathaniel Hayden [led, aut], Martin Morgan [aut], Hervé Pagès [aut, cre], Tomas Kalibera [ctb], Jeroen Ooms [ctb] |
| License | LGPL (>= 2) |
| URL | https://bioconductor.org/packages/Rhtslib, http://www.htslib.org/ |
| Bug Reports | https://github.com/Bioconductor/Rhtslib/issues |
| System Requirements | libbz2 & liblzma & libcurl (with header files), GNU make |
| Downloads rank | 26783 |
| Source branch | RELEASE_3_23 |
| biocViews | DataImport, Sequencing, Software |
Documentation
Download
Reverse dependencies
Imports Me (6): deepSNV, diffHic, maftools, mitoClone2, scPipe, stPipe
Links To Me (22): bamsignals, csaw, deepSNV, DiffBind, diffHic, epialleleR, FLAMES, h5vc, iscream, jackalope, maftools, methylKit, mitoClone2, podkat, QuasR, raer, Rfastp, Rsamtools, scPipe, ShortRead, stPipe, VariantAnnotation