RegionalST

Investigating regions of interest and performing regional cell type-specific analysis with spatial transcriptomics data

Bioconductor version: 3.23 · Package version: 1.10.0

This package analyze spatial transcriptomics data through cross-regional cell type-specific analysis. It selects regions of interest (ROIs) and identifys cross-regional cell type-specific differential signals. The ROIs can be selected using automatic algorithm or through manual selection. It facilitates manual selection of ROIs using a shiny application.

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RegionalST")