RedeR

Interactive visualization and manipulation of nested networks

Bioconductor version: 3.23 · Package version: 3.8.1

RedeR combines an R package with a stand-alone Java application for interactive visualization and manipulation of nested networks. Graph, node, and edge attributes can be configured using either graphical or command-line methods, following igraph syntax rules.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RedeR")

Details

Maintainer	Mauro Castro <mauro.a.castro@gmail.com>
Author	Xin Wang [ctb], Florian Markowetz [ctb], Mauro Castro [aut, cre] (ORCID: <https://orcid.org/0000-0003-4942-8131>)
License	GPL-3
URL	https://doi.org/10.1186/gb-2012-13-4-r29
Bug Reports	https://github.com/sysbiolab/RedeR/issues
System Requirements	Java Runtime Environment (Java>= 11)
Downloads rank	583
Source branch	RELEASE_3_23
biocViews	GUI, GraphAndNetwork, Network, NetworkEnrichment, NetworkInference, Software, SystemsBiology

Documentation

RedeR: bridging network analysis and visualization

Download

Source package

Dependencies

Depends: R (>= 4.4), methods

Imports: scales, igraph

Suggests: knitr, rmarkdown, BiocStyle, TreeAndLeaf

Reverse dependencies

Depends On Me (1): Fletcher2013b

Imports Me (4): PANR, RTN, transcriptogramer, TreeAndLeaf

Suggests Me (1): PathwaySpace