RcwlPipelines

Bioinformatics pipelines based on Rcwl

Bioconductor version: 3.23 · Package version: 1.28.0

A collection of Bioinformatics tools and pipelines based on R and the Common Workflow Language.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RcwlPipelines")

Maintainer	Qiang Hu <qiang.hu@roswellpark.org>
Author	Qiang Hu [aut, cre], Qian Liu [aut], Shuang Gao [aut]
License	GPL-2
System Requirements	nodejs
Downloads rank	235
Source branch	RELEASE_3_23
biocViews	Alignment, DNASeq, DataImport, ImmunoOncology, Preprocessing, QualityControl, RNASeq, Software, WorkflowStep

Dependencies

Depends: R (>= 3.6), Rcwl, BiocFileCache

Imports: rappdirs, methods, utils, git2r, httr, S4Vectors

Suggests: testthat, knitr, rmarkdown, BiocStyle

Reverse dependencies

Imports Me (1): ReUseData