RTNduals
Analysis of co-regulation and inference of 'dual regulons'
Bioconductor version: 3.23 · Package version: 1.36.0
RTNduals identifies co-regulatory loops between pairs of regulons inferred by the RTN package by evaluating their shared target genes. It infers dual regulons and tests whether regulator pairs exhibit cooperative or competitive influences on common targets.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RTNduals") Details
| Maintainer | Mauro Castro <mauro.a.castro@gmail.com>, Clarice Groeneveld <clari.groeneveld@gmail.com> |
| Author | Vinicius S. Chagas, Clarice S. Groeneveld, Gordon Robertson, Kerstin B. Meyer, Mauro A. A. Castro |
| License | Artistic-2.0 |
| Downloads rank | 288 |
| Source branch | RELEASE_3_23 |
| biocViews | GeneExpression, GeneRegulation, GraphAndNetwork, NetworkEnrichment, NetworkInference, Software |
Documentation
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Dependencies
Depends: R (>= 4.4.0), RTN (>= 2.32), methods
Imports: graphics, grDevices, stats, utils
Suggests: knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics
Reverse dependencies
Depends On Me (1): RTNsurvival