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RTNduals

Analysis of co-regulation and inference of 'dual regulons'

Bioconductor version: 3.23 · Package version: 1.36.0

RTNduals identifies co-regulatory loops between pairs of regulons inferred by the RTN package by evaluating their shared target genes. It infers dual regulons and tests whether regulator pairs exhibit cooperative or competitive influences on common targets.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RTNduals")

Details

MaintainerMauro Castro <mauro.a.castro@gmail.com>, Clarice Groeneveld <clari.groeneveld@gmail.com>
AuthorVinicius S. Chagas, Clarice S. Groeneveld, Gordon Robertson, Kerstin B. Meyer, Mauro A. A. Castro
LicenseArtistic-2.0
Downloads rank288
Source branchRELEASE_3_23
biocViewsGeneExpression, GeneRegulation, GraphAndNetwork, NetworkEnrichment, NetworkInference, Software

Documentation

Download

Dependencies

Depends: R (>= 4.4.0), RTN (>= 2.32), methods

Imports: graphics, grDevices, stats, utils

Suggests: knitr, rmarkdown, BiocStyle, RUnit, BiocGenerics

Reverse dependencies

Depends On Me (1): RTNsurvival