RMassBank
Workflow to process tandem MS files and build MassBank records
Bioconductor version: 3.23 · Package version: 3.22.0
Workflow to process tandem MS files and build MassBank records. Functions include automated extraction of tandem MS spectra, formula assignment to tandem MS fragments, recalibration of tandem MS spectra with assigned fragments, spectrum cleanup, automated retrieval of compound information from Internet databases, and export to MassBank records.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RMassBank") Details
| Maintainer | RMassBank at Eawag <massbank@eawag.ch> |
| Author | Michael Stravs, Emma Schymanski, Steffen Neumann, Erik Mueller, Paul Stahlhofen, Tobias Schulze with contributions of Hendrik Treutler |
| License | Artistic-2.0 |
| System Requirements | OpenBabel |
| Downloads rank | 529 |
| Source branch | RELEASE_3_23 |
| biocViews | Bioinformatics, ImmunoOncology, MassSpectrometry, Metabolomics, Software |
Documentation
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Dependencies
Depends: R (>= 4.1.0), Rcpp
Imports: assertthat, Biobase, ChemmineR, data.table, digest, dplyr, enviPat, glue, httr, httr2, logger, methods, MSnbase, mzR, purrr, R.utils, rcdk, readJDX, readr, rjson, S4Vectors, tibble, tidyselect, webchem, XML, yaml
Suggests: BiocStyle, CAMERA, gplots, knitr, magick, rmarkdown, RMassBankData (>= 1.33.1), RUnit, xcms (>= 1.37.1)
Reverse dependencies
Suggests Me (1): RMassBankData