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RCX

R package implementing the Cytoscape Exchange (CX) format

Bioconductor version: 3.23 · Package version: 1.16.0

Create, handle, validate, visualize and convert networks in the Cytoscape exchange (CX) format to standard data types and objects. The package also provides conversion to and from objects of iGraph and graphNEL. The CX format is also used by the NDEx platform, a online commons for biological networks, and the network visualization software Cytocape.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RCX")

Details

MaintainerFlorian Auer <florian.auer@informatik.uni-augsburg.de>
AuthorFlorian Auer [aut, cre] (ORCID: <https://orcid.org/0000-0002-5320-8900>)
LicenseMIT + file LICENSE
URLhttps://github.com/frankkramer-lab/RCX
Bug Reportshttps://github.com/frankkramer-lab/RCX/issues
Downloads rank231
Source branchRELEASE_3_23
biocViewsDataImport, Network, Pathways, Software

Documentation

Download

Dependencies

Depends: R (>= 4.2.0)

Imports: jsonlite, plyr, igraph, methods

Suggests: BiocStyle, testthat, knitr, rmarkdown, base64enc, graph

Reverse dependencies

Depends On Me (1): ndexr