RCX
R package implementing the Cytoscape Exchange (CX) format
Bioconductor version: 3.23 · Package version: 1.16.0
Create, handle, validate, visualize and convert networks in the Cytoscape exchange (CX) format to standard data types and objects. The package also provides conversion to and from objects of iGraph and graphNEL. The CX format is also used by the NDEx platform, a online commons for biological networks, and the network visualization software Cytocape.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RCX") Details
| Maintainer | Florian Auer <florian.auer@informatik.uni-augsburg.de> |
| Author | Florian Auer [aut, cre] (ORCID: <https://orcid.org/0000-0002-5320-8900>) |
| License | MIT + file LICENSE |
| URL | https://github.com/frankkramer-lab/RCX |
| Bug Reports | https://github.com/frankkramer-lab/RCX/issues |
| Downloads rank | 231 |
| Source branch | RELEASE_3_23 |
| biocViews | DataImport, Network, Pathways, Software |
Documentation
- RCX - an R package implementing the Cytoscape Exchange (CX) format
- Creating RCX from scratch
- Extending the RCX Data Model
- Appendix: The RCX and CX Data Model
Download
Dependencies
Depends: R (>= 4.2.0)
Imports: jsonlite, plyr, igraph, methods
Suggests: BiocStyle, testthat, knitr, rmarkdown, base64enc, graph
Reverse dependencies
Depends On Me (1): ndexr