RBedMethyl
Disk-backed Representation of ONT bedMethyl Files
Bioconductor version: 3.23 · Package version: 1.0.0
Bioconductor-native infrastructure for handling large nanoporetech modkit bedMethyl pileup files from ONT data using HDF5Array and DelayedArray.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RBedMethyl")Details
| Maintainer | Vasileios Lemonidis <vasileios.lemonidis@uantwerpen.be> |
| Author | Vasileios Lemonidis [aut, cre, cph] (ORCID: <https://orcid.org/0000-0002-6446-3536>), Center for Oncological Research, University of Antwerp [cph, fnd], Stichting Tegen Kanker [fnd] |
| License | GPL (>= 2) |
| URL | https://github.com/CMG-UA/RBedMethyl |
| Bug Reports | https://github.com/CMG-UA/RBedMethyl/issues |
| Downloads rank | 59 |
| Source branch | RELEASE_3_23 |
| biocViews | DNAMethylation, DataImport, DifferentialMethylation, Epigenetics, Infrastructure, Software |
Documentation
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Dependencies
Imports: methods, HDF5Array, rhdf5, DelayedArray, DelayedMatrixStats, SummarizedExperiment, bsseq, GenomicRanges, S4Vectors, IRanges, data.table