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Qtlizer

Comprehensive QTL annotation of GWAS results

Bioconductor version: 3.23 · Package version: 1.26.0

This R package provides access to the Qtlizer web server. Qtlizer annotates lists of common small variants (mainly SNPs) and genes in humans with associated changes in gene expression using the most comprehensive database of published quantitative trait loci (QTLs).

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Qtlizer")

Details

MaintainerMatthias Munz <matthias.munz@gmx.de>
AuthorMatthias Munz [aut, cre] (ORCID: <https://orcid.org/0000-0002-4728-3357>), Julia Remes [aut]
LicenseGPL-3
Bug Reportshttps://github.com/matmu/Qtlizer/issues
Downloads rank251
Source branchRELEASE_3_23
biocViewsGenetics, GenomeWideAssociation, LinkageDisequilibrium, SNP, Software

Documentation

Download

Dependencies

Depends: R (>= 3.6.0)

Imports: httr, curl, GenomicRanges, stringi

Suggests: BiocStyle, testthat, knitr, rmarkdown