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QTLExperiment

S4 classes for QTL summary statistics and metadata

Bioconductor version: 3.23 · Package version: 2.4.0

QLTExperiment defines an S4 class for storing and manipulating summary statistics from QTL mapping experiments in one or more states. It is based on the 'SummarizedExperiment' class and contains functions for creating, merging, and subsetting objects. 'QTLExperiment' also stores experiment metadata and has checks in place to ensure that transformations apply correctly.

Installation

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("QTLExperiment")

Details

MaintainerAmelia Dunstone <amelia.dunstone@svi.edu.au>
AuthorChristina Del Azodi [aut], Davis McCarthy [ctb], Amelia Dunstone [cre, aut] (ORCID: <https://orcid.org/0009-0009-6426-1529>)
LicenseGPL-3
URLhttps://github.com/dunstone-a/QTLExperiment
Bug Reportshttps://github.com/dunstone-a/QTLExperiment/issues
Downloads rank196
Source branchRELEASE_3_23
biocViewsDataImport, DataRepresentation, FunctionalGenomics, Infrastructure, SNP, Sequencing, Software

Documentation

Download

Dependencies

Depends: SummarizedExperiment

Imports: methods, rlang, checkmate, dplyr, collapse, vroom, tidyr, tibble, utils, stats, ashr, S4Vectors, BiocGenerics

Suggests: testthat, BiocStyle, knitr, rmarkdown, covr

Reverse dependencies

Depends On Me (1): multistateQTL