QTLExperiment
S4 classes for QTL summary statistics and metadata
Bioconductor version: 3.23 · Package version: 2.4.0
QLTExperiment defines an S4 class for storing and manipulating summary statistics from QTL mapping experiments in one or more states. It is based on the 'SummarizedExperiment' class and contains functions for creating, merging, and subsetting objects. 'QTLExperiment' also stores experiment metadata and has checks in place to ensure that transformations apply correctly.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("QTLExperiment") Details
| Maintainer | Amelia Dunstone <amelia.dunstone@svi.edu.au> |
| Author | Christina Del Azodi [aut], Davis McCarthy [ctb], Amelia Dunstone [cre, aut] (ORCID: <https://orcid.org/0009-0009-6426-1529>) |
| License | GPL-3 |
| URL | https://github.com/dunstone-a/QTLExperiment |
| Bug Reports | https://github.com/dunstone-a/QTLExperiment/issues |
| Downloads rank | 196 |
| Source branch | RELEASE_3_23 |
| biocViews | DataImport, DataRepresentation, FunctionalGenomics, Infrastructure, SNP, Sequencing, Software |
Documentation
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Dependencies
Depends: SummarizedExperiment
Imports: methods, rlang, checkmate, dplyr, collapse, vroom, tidyr, tibble, utils, stats, ashr, S4Vectors, BiocGenerics
Reverse dependencies
Depends On Me (1): multistateQTL