Polytect
An R package for digital data clustering
Bioconductor version: 3.23 · Package version: 1.4.0
Polytect is an advanced computational tool designed for the analysis of multi-color digital PCR data. It provides automatic clustering and labeling of partitions into distinct groups based on clusters first identified by the flowPeaks algorithm. Polytect is particularly useful for researchers in molecular biology and bioinformatics, enabling them to gain deeper insights into their experimental results through precise partition classification and data visualization.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Polytect") Details
| Maintainer | Yao Chen <emmachentar@live.com> |
| Author | Yao Chen [aut, cre] (ORCID: <https://orcid.org/0000-0001-8172-3996>) |
| License | Artistic-2.0 |
| URL | https://github.com/emmachenlingo/Polytect |
| Bug Reports | https://github.com/emmachenlingo/Polytect/issues |
| Downloads rank | 143 |
| Source branch | RELEASE_3_23 |
| biocViews | Classification, Clustering, MultiChannel, Software, ddPCR |
Documentation
Download
Dependencies
Depends: R (>= 4.4.0)
Imports: stats, utils, grDevices, mvtnorm, sn, dplyr, flowPeaks, ggplot2, tidyverse, cowplot, mlrMBO, DiceKriging, smoof, ParamHelpers, lhs, rgenoud, BiocManager
Suggests: testthat (>= 3.0.0), knitr, rmarkdown, ddPCRclust