PharmacoGx
Analysis of Large-Scale Pharmacogenomic Data
Bioconductor version: 3.23 · Package version: 3.16.0
Contains a set of functions to perform large-scale analysis of pharmaco-genomic data. These include the PharmacoSet object for storing the results of pharmacogenomic experiments, as well as a number of functions for computing common summaries of drug-dose response and correlating them with the molecular features in a cancer cell-line.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PharmacoGx")Details
| Maintainer | Benjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca> |
| Author | Petr Smirnov [aut], Christopher Eeles [aut], Jermiah Joseph [aut], Zhaleh Safikhani [aut], Mark Freeman [aut], Feifei Li [aut], Benjamin Haibe-Kains [aut, cre] |
| License | GPL (>= 3) |
| Bug Reports | https://github.com/bhklab/PharmacoGx/issues |
| Downloads rank | 716 |
| Source branch | RELEASE_3_23 |
| biocViews | Classification, GeneExpression, Pharmacogenetics, Pharmacogenomics, Software |
Documentation
- PharmacoGx: An R Package for Analysis of Large Pharmacogenomic Datasets
- Detecting Drug Synergy and Antagonism with PharmacoGx 3.0+
- PharmacoGx: An R Package for Analysis of Large Pharmacogenomic Datasets
Download
Dependencies
Depends: R (>= 4.1.0), CoreGx
Imports: BiocGenerics, Biobase, S4Vectors, SummarizedExperiment, MultiAssayExperiment, BiocParallel, ggplot2, RColorBrewer, magicaxis, parallel, caTools, methods, downloader, stats, utils, graphics, grDevices, reshape2, jsonlite, data.table, checkmate, boot, coop
LinkingTo: Rcpp
Suggests: pander, rmarkdown, knitr, knitcitations, crayon, testthat, markdown, BiocStyle, R.utils